variant.auto.plot: Automated Multi-sample plot

In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data

Description

Automated plotting of all variants present in the WES data

Usage

variant.auto.plot(CD.obj, annotation.col)

Arguments

CD.obj	A cluster.doc object
annotation.col	name of the column containing annotations of the variants in original WES dataframe used in the clonal deconvolution using cluster.doc

Value

Plot objects with the relevant annotation highlighted.

This function plots all variants present in the sample. Depending on the number of variants this can generate a lot of plots. All of these plots will be saved under a new directory named img inside the working directory. Hence, it is important to check that there are no directory named img inside the working directory

Examples

#cd.res<-cluster.doc(test.dat,1,2)
#variant.auto.plot(cd.res,'annotation')

Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.