match.maker: Summary estimate compiler

In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data

Description

Combining AlleleComp outputs from different samples with the variant sequence data.

Usage

match.maker(x, y)

Arguments

x	A list object needs to be created by split from the sequencing data.
y	A character vector of sample names or IDs.

Details

The variant sequence data needs to be split by sample names or IDs for x. And the input of y has to be in the same order as that of the split object. See example for more details.

Value

A dataframe object identical to the original variant data with an additional column named segment signifying the allelic make up of each variant in the corresponding sample.

See Also

AlleleComp

Examples

#NB<-split(Neuroblastoma,Neuroblastoma$Sample)
#NB<-match.maker(x=NB,y=c("metastasis.1","metastasis.2","primary.1","primary.2"))
#View(NB)

Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.