test.dat: Random number generated WES data for eight hypothetical...

In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data

Description

Data generated with varying random normal probabilities. Ideal llelic composition is assumed resulting in two separate distinct clouds of clones and sub-clones.

Usage

data(test.dat)

Format

An object of class "dataframe"

Value

sample is column of IDs corresponding to 8 distinct samples.

vaf denotes the variant allele frequencies of each variant (see annotation).

CCF are the cancer cell fractions of each sample.

annotation indicates corresponding variants for which observations are notes in each row. Variants can be shared among several samples as well as be private mutation.

Examples

data(test.dat)
table(test.dat$CCF)
table(test.dat$annotation)
hist(test.dat$vaf)

Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.