segment.plot: Plot of allelic composition
In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data
Description
Usage
Arguments
Value
See Also
Examples
Description
Departure in clusters of different allelic composition are portrayed for tumor sample
Usage
1
segment.plot(data, base.copy)
Arguments
data
A match.maker or AlleleComp derived object.
base.copy
is the baseline balanced copynumber present in the sample usually "1 + 1" or "2 + 2".
Value
A plot of the allelic segmentation with average log-transformed coverage ratios in X-axis and
average allelic-imbalances in the Y-axis. This plot can be interpreted in the similar fashion as described
by Rasmussen et al., 2011
See Also
Examples
1
#segment.plot(data = data, base.copy = "1 + 1")
Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.
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Description Usage Arguments Value See Also Examples
Description
Departure in clusters of different allelic composition are portrayed for tumor sample
Usage
1 | segment.plot(data, base.copy)
|
Arguments
data |
A |
base.copy |
is the baseline balanced copynumber present in the sample usually "1 + 1" or "2 + 2". |
Value
A plot of the allelic segmentation with average log-transformed coverage ratios in X-axis and average allelic-imbalances in the Y-axis. This plot can be interpreted in the similar fashion as described by Rasmussen et al., 2011
See Also
Examples
1 | #segment.plot(data = data, base.copy = "1 + 1")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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