mutect2.qc: Quality Control on Mutect2 output
In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data
Description
Usage
Arguments
Value
Examples
Description
A quality control (QC) and transformation on the sequencing statistics output from the Mutect2 variant caller. This re-organizes the data in a way that is
friendlier for using in CloneStrat
Usage
1
mutect2.qc(data, sample.name)
Arguments
data
A dataframe of the Mutect2 output
sample.name
a vector of sample names or IDs
Value
A transformed dataframe usable in CloneStrat that represents data on each variant of each sample in rows
Examples
1
#mutect2.qc(data,sample.name=c("sample_1","sample_2"))
Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.
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Description Usage Arguments Value Examples
Description
A quality control (QC) and transformation on the sequencing statistics output from the Mutect2 variant caller. This re-organizes the data in a way that is friendlier for using in CloneStrat
Usage
1 | mutect2.qc(data, sample.name)
|
Arguments
data |
A |
sample.name |
a |
Value
A transformed dataframe usable in CloneStrat that represents data on each variant of each sample in rows
Examples
1 | #mutect2.qc(data,sample.name=c("sample_1","sample_2"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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