defineEntomology: Defines entomology setting

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Defines entomology setting

Description

Defines entomology setting

Usage

defineEntomology(
  baseList,
  seasonalityParameters,
  mosquitoParameters,
  mode = "dynamic",
  name = "Namawala",
  scaledAnnualEIR = NULL,
  verbose = FALSE,
  append = TRUE
)

define_entomology(
  baseList,
  seasonalityParameters,
  mosquitoParameters,
  mode = "dynamic",
  name = "Namawala",
  scaledAnnualEIR = NULL,
  verbose = FALSE,
  append = TRUE
)

Arguments

baseList	List with experiment data.
seasonalityParameters	Seasonality parameterization.
mosquitoParameters	Mosquito bionomics parameterization list of different mosquito species as obtained from AnophelesModel package function get_OM_ento_snippet
mode	Dynamic or static
name	Name of your setting
scaledAnnualEIR	If not NULL, annualEIR will be rescaled by numeric
verbose	If TRUE, print detailed output.
append	If TRUE, then append to existing baseList, otherwise overwrite

Examples

 mosquitoParameters=list("Anopheles gambiae"=list(
  mosqRestDuration=list(value="2"),
  extrinsicIncubationPeriod=list(value="10"),
  mosqLaidEggsSameDayProportion=list(value="0.589"),
  mosqSeekingDuration=list(value="3"),
  mosqSurvivalFeedingCycleProbability=list(value="0.75"),
  mosqProbBiting=list(mean="0.95",
                      variance="0"),
  mosqProbFindRestSite=list(mean="0.95",
                            variance="0"),
  mosqProbResting=list(mean="0.99",
                       variance="0"),
   mosqProbOvipositing=list(mean="0.88"),
  mosqHumanBloodIndex=list(mean="0.6243")))

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.