define_changeHS_compat: Function to write the case management deployments

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Function to write the case management deployments

Description

Function to write the case management deployments

Usage

define_changeHS_compat(
  baseList,
  access = "Access",
  coverage = NULL,
  y1 = 2000,
  y2 = 2015,
  use_at_symbol = TRUE,
  pSelfTreatUncomplicated = 0.01821375,
  futSevere = NULL,
  pSeekOfficialCareSevere = 0.48,
  SIMSTART = "1918-01-01",
  every = 1,
  interval = "year",
  m1 = 1,
  m2 = 1,
  init.act = 1,
  init.qn = 1,
  init.self = 1,
  comp.act = 1,
  comp.qn = 1,
  comp.self = 1
)

Arguments

baseList	List with experiment data.
access	Name of coverage value (i.e. "Access")
coverage	Name of future intervention for change in HS (i.e. "@futCM@")
y1	Year of the first date (surveys starting from year y1)
y2	Year of the end date (surveys continuing until year y2)
use_at_symbol	If TRUE, variable will be replaced with setting specific values
pSelfTreatUncomplicated	Proportion of uncomplicated episodes treated at home
futSevere	Variable for different values of 'pseekOfficialCareSevere'
pSeekOfficialCareSevere	Proportion of severe episodes that seek care at the formal sector
SIMSTART	Start of the simulations (equal to ORIGIN!)
every	Interval size
interval	Interval size (days, weeks, )
m1	Month of the first date
m2	Month of the end date
init.act	Initial ACT
init.qn	Initial Quinine
init.self	Initial self treatment
comp.act	See OpenMalaria
comp.qn	See OpenMalaria
comp.self	See OpenMalaria

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.