defineVectorControl: Adds vector control intervention parameterisation to baseList

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Adds vector control intervention parameterisation to baseList

Description

Adds vector control intervention parameterisation to baseList

Usage

defineVectorControl(
  baseList,
  vectorInterventionParameters,
  append = TRUE,
  name = NULL,
  verbatim = FALSE,
  hist = FALSE,
  resistance = 0.1
)

define_vector_control(
  baseList,
  vectorInterventionParameters,
  append = TRUE,
  name = NULL,
  verbatim = FALSE,
  hist = FALSE,
  resistance = 0.1
)

Arguments

baseList	List with experiment data.
vectorInterventionParameters	Vector control intervention parameterization list depending on three parameters (deterrency, preprandrial, postprandial) and decay functions:
append	If TRUE, then append to existing baseList, otherwise overwrites
name	Name tag list
verbatim	If TRUE, then show messages
hist	If TRUE, then decay is assumed to be step function set to 1 for a year and then to zero for the remainder
resistance	Scaling function of insecticide resistance TODO

Examples

vectorInterventionParameters <- list(
  "LLIN" = list(
    deterrency = list(
      decay = list(
        L = "0.7",
        "function" = "weibull"
      ),
      anophelesParams = list(
        "Anopheles gambiae" = list(
          propActive = 1,
          value = "0.5"
        ),
        "Anopheles funestus" = list(
          propActive = 1,
          value = "0.3"
        )
      )
    ),
    preprandialKillingEffect = list(
      decay = list(
        L = "0.4",
        "function" = "weibull"
      ),
      anophelesParams = list(
        "Anopheles gambiae" = list(
          propActive = 1,
          value = "0.6"
        ),
        "Anopheles funestus" = list(
          propActive = 1,
          value = "0.67"
        )
      )
    ),
    postprandialKillingEffect = list(
      decay = list(
        L = "0.45",
        "function" = "weibull"
      ),
      anophelesParams = list(
        "Anopheles gambiae" = list(
          propActive = 1,
          value = "0.3"
        ),
        "Anopheles funestus" = list(
          propActive = 1,
          value = "0.2"
        )
      )
    )
  )
)

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.