defineHealthSystem: Writes the health system part

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Writes the health system part

Description

Writes the health system part

Usage

defineHealthSystem(
  baseList,
  name = "Tanzania ACT",
  initACT = 1,
  initQN = 1,
  initSelf = 1,
  compACT = 1,
  compQN = 1,
  compSelf = 1,
  pSeekOfficialCareUncomplicated1,
  pSelfTreatUncomplicated = 0.01821375,
  pSeekOfficialCareUncomplicated2,
  pSeekOfficialCareSevere = 0.48
)

define_health_system(
  baseList,
  name = "Tanzania ACT",
  initACT = 1,
  initQN = 1,
  initSelf = 1,
  compACT = 1,
  compQN = 1,
  compSelf = 1,
  pSeekOfficialCareUncomplicated1,
  pSelfTreatUncomplicated = 0.01821375,
  pSeekOfficialCareUncomplicated2,
  pSeekOfficialCareSevere = 0.48
)

Arguments

baseList	List with experiment data.
name	Name of health system
initACT	Initial artemisinine combination therapy.
initQN	Initial quinine.
initSelf	Initial probability of self-treatment.
compACT	Compliance artemisinine combination therapy.
compQN	Compliance quinine.
compSelf	Compliance to self-treatment.
pSeekOfficialCareUncomplicated1	Probability that a patient with newly incident uncomplicated disease seeks official care.
pSelfTreatUncomplicated	Probability that a patient with uncomplicated disease without recent history of disease (i.e. first line) will self-treat.
pSeekOfficialCareUncomplicated2	Probability that a patient with recurrence of uncomplicated disease seeks official care.
pSeekOfficialCareSevere	Probability that a patient with severe disease obtains appropriate care.

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.