API for SydneyBioX/CiteFuse
CiteFuse: multi-modal analysis of CITE-seq data
| Global functions | |
|---|---|
| .clr | Source code |
| .discretisation | Source code |
| .discretisationEigenVectorData | Source code |
| .dominateset | Source code |
| .extract_exprsMat | Source code |
| .extract_facet_by | Source code |
| .extract_filter_features | Source code |
| .extract_group_by | Source code |
| .get_cell_subsets_de | Source code |
| .get_color_by | Source code |
| .get_expand_grid_average | Source code |
| .minMax | Source code |
| .normalize | Source code |
| .zeroProp | Source code |
| .ziMinMax | Source code |
| CITEseq_example | Man page |
| CiteFuse | Man page Source code |
| DEbubblePlot | Man page Source code |
| DEcomparisonPlot | Man page Source code |
| DEgenes | Man page Source code |
| DEgenesCross | Man page Source code |
| SNF | Source code |
| affinityMatrix | Source code |
| alrRcpp | Source code |
| check_wall_names | Source code |
| cite_colorPal | Source code |
| cite_shapePal | Source code |
| clrRcpp | Source code |
| clr_rho | Source code |
| coordToIndex | Source code |
| corRcpp | Source code |
| covRcpp | Source code |
| crossSampleDoublets | Man page Source code |
| doWilcox | Source code |
| fitMixtures | Source code |
| funMixModel | Source code |
| geneADTnetwork | Man page Source code |
| getThreshold | Source code |
| half2mat | Source code |
| igraphClustering | Man page Source code |
| importanceADT | Man page Source code |
| indexPairs | Source code |
| indexToCoord | Source code |
| labRcpp | Source code |
| ligandReceptorTest | Man page Source code |
| linRcpp | Source code |
| lltRcpp | Source code |
| lr2rho | Source code |
| lr2vlr | Source code |
| lr_pair_subset | Man page |
| normaliseExprs | Man page Source code |
| normalize | Source code |
| phiRcpp | Source code |
| plotHTO | Man page Source code |
| plotHTOSingle | Man page Source code |
| preprocessing | Man page Source code |
| ratiosRcpp | Source code |
| readFrom10X | Man page Source code |
| reducedDimSNF | Man page Source code |
| rhoRcpp | Source code |
| scatterSingle | Source code |
| sce_control_subset | Man page |
| sce_ctcl_subset | Man page |
| selectDEgenes | Man page Source code |
| selectHVG | Source code |
| spectralClustering | Man page Source code |
| symRcpp | Source code |
| urtRcpp | Source code |
| visImportance | Man page Source code |
| visLigandReceptor | Man page Source code |
| visualiseDim | Man page Source code |
| visualiseExprs | Man page Source code |
| visualiseExprsList | Man page Source code |
| visualiseKNN | Man page Source code |
| vlrRcpp | Source code |
| withinSampleDoublets | Man page Source code |
| wtmRcpp | Source code |
| wtvRcpp | Source code |
