Files in SydneyBioX/CiteFuse
CiteFuse: multi-modal analysis of CITE-seq data
.Rbuildignore
.gitignore
.travis.yml
CiteFuse.Rproj
DESCRIPTION
NAMESPACE
NEWS.md
R/DEgenes.R
R/QCfunctions.R
R/RcppExports.R
R/clustering.R
R/data.R
R/geneADTnetwork.R
R/importanceADT.R
R/ligandReceptor_analysis.R
R/runSNF.R
R/utils.R
R/visualise_features.R
README.md
_pkgdown.yml
data/CITEseq_example.rda
data/lr_pair_subset.rda
data/sce_control_subset.rda
data/sce_ctcl_subset.rda
inst/CITATION
inst/figures/CiteFuse_overview.png
man/CITEseq_example.Rd
man/CiteFuse.Rd
man/DEbubblePlot.Rd
man/DEcomparisonPlot.Rd
man/DEgenes.Rd
man/DEgenesCross.Rd
man/crossSampleDoublets.Rd
man/geneADTnetwork.Rd
man/igraphClustering.Rd
man/importanceADT.Rd
man/ligandReceptorTest.Rd
man/lr_pair_subset.Rd
man/normaliseExprs.Rd
man/plotHTO.Rd
man/plotHTOSingle.Rd
man/preprocessing.Rd
man/readFrom10X.Rd
man/reducedDimSNF.Rd
man/sce_control_subset.Rd
man/sce_ctcl_subset.Rd
man/selectDEgenes.Rd
man/spectralClustering.Rd
man/visImportance.Rd
man/visLigandReceptor.Rd
man/visualiseDim.Rd
man/visualiseExprs.Rd
man/visualiseExprsList.Rd
man/visualiseKNN.Rd
man/withinSampleDoublets.Rd
src/.gitignore
src/RcppExports.cpp
src/backend.cpp
src/backend.h
src/lr2propr.cpp
vignettes/CiteFuse.Rmd
