Man pages for SydneyBioX/CiteFuse
CiteFuse: multi-modal analysis of CITE-seq data

CiteFuseCiteFuse
CITEseq_exampleA subset of ECCITE-seq data (control)
crossSampleDoubletscrossSampleDoublets
DEbubblePlotDEbubblePlot
DEcomparisonPlotDEcomparisonPlot
DEgenesDEgenes
DEgenesCrossDEgenesCross
geneADTnetworkgeneADTnetwork
igraphClusteringigraphClustering
importanceADTimportanceADT
ligandReceptorTestligandReceptorTest
lr_pair_subsetA subset of Ligand Receptor Pairs
normaliseExprsnormaliseExprs
plotHTOplotHTO
plotHTOSingleplotHTOSingle
preprocessingA function to preprocess the list of expression matrix
readFrom10XreadFrom10X
reducedDimSNFreducedDimSNF
sce_control_subsetA SingleCellExperiment of ECCITE-seq data
sce_ctcl_subsetA SingleCellExperiment of ECCITE-seq data
selectDEgenesselectDEgenes
spectralClusteringspectralClustering
visImportancevisImportance
visLigandReceptorvisLigandReceptor
visualiseDimvisualiseDim
visualiseExprsvisualiseExprs
visualiseExprsListvisualiseExprsList
visualiseKNNvisualiseKNN
withinSampleDoubletswithinSampleDoublets
SydneyBioX/CiteFuse documentation built on March 23, 2022, 1:19 p.m.