README.md

CiteFuse

CiteFuse is a streamlined package consisting of a suite of tools for pre-processing, modality integration, clustering, differential RNA and ADT expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualization of CITE-seq data

Installation

Install CiteFuse required Bioconductor 3.10

library(BiocManager)
install(version = "3.10")
BiocManager::install(c("SummarizedExperiment", "S4Vectors", "SingleCellExperiment", "scater", "scran"))
library(devtools)
devtools::install_github("SydneyBioX/CiteFuse")

Vignette

You can find the vignette at our website: https://sydneybiox.github.io/CiteFuse/articles/CiteFuse.html.

CiteFuse overview



SydneyBioX/CiteFuse documentation built on March 23, 2022, 1:19 p.m.