README.md

In SydneyBioX/CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data

CiteFuse

CiteFuse is a streamlined package consisting of a suite of tools for pre-processing, modality integration, clustering, differential RNA and ADT expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualization of CITE-seq data

Installation

Install CiteFuse via Bioconductor

library(BiocManager)
BiocManager::install("CiteFuse")

Install github version CiteFuse

BiocManager::install("SydneyBioX/CiteFuse")

Vignette

You can find the vignette at our website: https://sydneybiox.github.io/CiteFuse/articles/CiteFuse.html.

CiteFuse overview

Citation

Hani Jieun Kim, Yingxin Lin, Thomas A Geddes, Jean Yee Hwa Yang, Pengyi Yang, CiteFuse enables multi-modal analysis of CITE-seq data, _Bioinformatics_, Volume 36, Issue 14, 15 July 2020, Pages 4137–4143, [https://doi.org/10.1093/bioinformatics/btaa282](https://doi.org/10.1093/bioinformatics/btaa282)

SydneyBioX/CiteFuse documentation built on Feb. 13, 2023, 6:04 a.m.