visualiseKNN: visualiseKNN

In SydneyBioX/CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data

visualiseKNN

Description

A function to perform louvain clustering

Usage

visualiseKNN(sce, colour_by = NULL, metadata = "SNF_W")

Arguments

sce	A singlecellexperiment object
colour_by	the name of coldata that is used to colour the node
metadata	indicates the meta data name of affinity matrix to virsualise

Value

A igraph plot

Examples

data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
SNF_W_louvain <- igraphClustering(sce_control_subset,
method = "louvain")
visualiseKNN(sce_control_subset, colour_by = "SNF_W_louvain")

SydneyBioX/CiteFuse documentation built on Feb. 13, 2023, 6:04 a.m.