API for SydneyBioX/CiteFuse
CiteFuse: multi-modal analysis of CITE-seq data

Global functions
.clr Source code
.discretisation Source code
.discretisationEigenVectorData Source code
.dominateset Source code
.extract_exprsMat Source code
.extract_facet_by Source code
.extract_filter_features Source code
.extract_group_by Source code
.get_cell_subsets_de Source code
.get_color_by Source code
.get_expand_grid_average Source code
.minMax Source code
.normalize Source code
.zeroProp Source code
.ziMinMax Source code
CITEseq_example Man page
CiteFuse Man page Source code
DEbubblePlot Man page Source code
DEcomparisonPlot Man page Source code
DEgenes Man page Source code
DEgenesCross Man page Source code
SNF Source code
affinityMatrix Source code
check_wall_names Source code
cite_colorPal Source code
cite_shapePal Source code
crossSampleDoublets Man page Source code
doWilcox Source code
fitMixtures Source code
funMixModel Source code
geneADTnetwork Man page Source code
getThreshold Source code
igraphClustering Man page Source code
importanceADT Man page Source code
ligandReceptorTest Man page Source code
lr_pair_subset Man page
normaliseExprs Man page Source code
normalize Source code
plotHTO Man page Source code
plotHTOSingle Man page Source code
preprocessing Man page Source code
readFrom10X Man page Source code
reducedDimSNF Man page Source code
scatterSingle Source code
sce_control_subset Man page
sce_ctcl_subset Man page
selectDEgenes Man page Source code
selectHVG Source code
spectralClustering Man page Source code
visImportance Man page Source code
visLigandReceptor Man page Source code
visualiseDim Man page Source code
visualiseExprs Man page Source code
visualiseExprsList Man page Source code
visualiseKNN Man page Source code
withinSampleDoublets Man page Source code
SydneyBioX/CiteFuse documentation built on March 23, 2022, 1:19 p.m.