Man pages for TheMillerLab/genetex
BodyMapR
| cnv | Apply NLP to genomic reports to extract copy number variants... |
| cnv.fmi | Apply NLP to genomic reports to extract copy number variants... |
| cnv.guardant | Apply NLP to genomic reports to extract copy number variants... |
| cnv.onco | Apply NLP to genomic reports to extract copy number variants... |
| cnv.snap | Apply NLP to genomic reports to extract copy number variants... |
| genes_boundary_regex | Create a single regex of all cancer-related gene symbols |
| genes_regex | Create a single regex of all cancer-related gene symbols |
| genetex_to_redcap | Apply NLP to genomic reports to import into the Genomics... |
| gene.variants | Abstract Genes with nucleotide variants from genomic reports |
| gene.variants.fmi | Apply NLP to genomic reports to extract gene variants (CNVs)... |
| gene.variants.guardant | Abstract Genes with nucleotide variants from Guardant Health... |
| gene.variants.isolate.oncopanel | Abstract Genes with Nucleotide variants from Oncopanel... |
| gene.variants.isolate.snapshot | Abstract Genes with genetic variants from SNaPshot genomic... |
| gene.variants.ready.for.redcap.oncopanel | Text Mine a Oncopanel genomic report and prepares the data... |
| gene.variants.ready.for.redcap.snapshot | Text Mines a SNaPshot genomic report and prepares the data... |
| gene.variants.transform.for.redcap | Transform a data frame of untidy gene name and variants into... |
| genomics.tissue.type | Assing the appropriate numeric to a string designating the... |
| hello | Hello, World! |
| link.gene.variant.variables | Link a column of gene variant variables that are found in the... |
| mmr | Abstract Microsatellite data from genomic reports |
| mutational.signatures | Apply NLP to genomic reports to extract out mutational... |
| platform | Use text mining to assing numeric to genomics platforms |
| reconcile_gene_names | Replace synonyms for gene names with those that correspond to... |
| tmb | Apply NLP to genomic reports to extract out tumor mutation... |
