gene.variants.isolate.snapshot: Abstract Genes with genetic variants from SNaPshot genomic...

Description Usage Arguments Value Examples

View source: R/gene.variants.isolate.snapshot.R

Description

'gene.variants.isolate.snapshot()' provides natural language processing tools to abstract genetic variants and gene names from SNaPshot reports

Usage

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gene.variants.isolate.snapshot(data = dplyr::tibble(Results = clipboard()))

Arguments

data

The data frame of a genomic report. Ideally this is information copied to the Clipboard from the EHR report by "selecting all" and then "copy". That is the default. If you don't use the clipboard function, you can use a data frame of the text file. The single column data frame should be labeled "Results". Required.

Value

a data frame with a column that has the gene names and variants in one cell

Examples

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# Test with embedded data frame "snapshot_sample_report"
snapshot_sample_report %>%
  gene.variants.isolate.snapshot()

TheMillerLab/genetex documentation built on Dec. 18, 2021, 4:09 p.m.