gene.variants.isolate.oncopanel: Abstract Genes with Nucleotide variants from Oncopanel...

In TheMillerLab/genetex: BodyMapR

Description

'gene.variants.isolate.oncopanel()' provides natural language processing tools to abstract genes with nucleotide variants from Oncopanel reports

Usage

gene.variants.isolate.oncopanel(data = dplyr::tibble(Results = clipboard()))

Arguments

data

The data frame of a genomic report, here an Oncopanel report. Ideally this is information copied to the Clipboard from the EHR report by "selecting all" and then "copy". That is the default. If you don't use the clipboard function, you can use a data frame of the text file. The single column data frame should be labeled "Results". Required.

Value

a data frame with a column that has the gene names and variants in one cell (i.e. untidy data)

Examples

# Test with embedded data frame "oncopanel_sample_report"
oncopanel_sample_report %>%
  gene.variants.isolate.oncopanel()

TheMillerLab/genetex documentation built on Dec. 18, 2021, 4:09 p.m.