WGCNA_dataCheck: This is used to read in and check the distribution of WGCNA...

In Tong-Chen/YSX: For Yishengxin Training

Description

This is used to read in and check the distribution of WGCNA data in case there is systematic shift of expression data (espacially for data from different detection platforms).

Usage

WGCNA_dataCheck(datExpr, ...)

Arguments

datExpr	Normal gene expression matrix (gene x sample).
...	Other parameters given to widedataframe2boxplot.

Value

A ggplo2 object.

Examples

exprMat <- "test.file"
wgcnaL <- WGCNA_readindata(exprMat)

traitData <- 'trait.file'
wgcnaL <- WGCNA_readindata(exprMat, traitData)
datExpr <- wgcnaL$datExpr
WGCNA_dataCheck(datExpr)

Tong-Chen/YSX documentation built on Jan. 25, 2021, 2:49 a.m.