sp_corrplot: A visualization of a correlation matrix.

In Tong-Chen/YSX: For Yishengxin Training

Description

A visualization of a correlation matrix.

Usage

sp_corrplot(
  data,
  method = "circle",
  type = "full",
  bg = "white",
  title = NULL,
  is.corr = FALSE,
  diag = TRUE,
  addCoef.col = NULL,
  addCoefasPercent = FALSE,
  order = "original",
  hclust.method = NULL,
  tl.pos = "n",
  tl.cex = 1,
  tl.col = "red",
  tl.srt = 90,
  cl.pos = NULL,
  cl.lim = NULL,
  cl.align.text = "c",
  saveplot = NULL,
  mar = c(0, 0, 0, 0),
  ...
)

Arguments

data	Matrix or data file (with header line, the first column will be treated as row names, tab separated).
method	The visualization method of correlation matrix to be used. Currently, it supports seven methods, named "circle" (default), "square", "ellipse", "number", "pie", "shade" and "color".
type	Type, "full" (default), "upper" or "lower", display full matrix, lower triangular or upper triangular matrix.
bg	The background color.
title	Title of the graph.
is.corr	Logical, whether the input matrix is a correlation matrix or not. We can visualize the non-correlation matrix by setting is.corr = FALSE.
diag	Logical, whether display the correlation coefficients on the principal diagonal.
addCoef.col	Color of coefficients added on the graph. If NULL (default), add no coefficients.
addCoefasPercent	Logic, whether translate coefficients into percentage style for spacesaving.
order	The ordering method of the correlation matrix. "original" for original order (default). "AOE" for the angular order of the eigenvectors. "FPC" for the first principal component order. "hclust" for the hierarchical clustering order. "alphabet" for alphabetical order.
hclust.method	The agglomeration method to be used when order is hclust. This should be one of "ward", "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median" or "centroid".
tl.cex	Numeric, for the size of text label (variable names).
tl.col	The color of text label.
tl.srt	Numeric, for text label string rotation in degrees.
cl.pos	Character or logical, position of color labels; If character, it must be one of "r" (default if type=="upper" or "full"), "b" (default if type=="lower") or "n", "n" means don't draw colorlabel.
cl.lim	The limits (x1, x2) in the colorlabel.
cl.align.text	"l", "c" (default) or "r", for number-label in colorlabel, "l" means left, "c" means center, and "r" means right.
saveplot	Save plot to given file "a.pdf", "b.png".
...

Value

a grid object

Examples

data<-matrix(rnorm(100),nrow=20)
rownames(data)<- paste0("corrtest", 1:20)
colnames(data)<- paste0("zhou", 1:5)
sp_corrplot(data, cl.align.text = "l")
sp_corrplot(data,method="pie",type="lower",title="corrplot", cl.align.text = "l", mar=c(0,0,1,0))
sp_corrplot(data,method="ellipse",type="upper", cl.align.text = "l", tl.pos="td")

Tong-Chen/YSX documentation built on Jan. 25, 2021, 2:49 a.m.