sp_raincloud: raincloud

In Tong-Chen/YSX: For Yishengxin Training

Description

raincloud

Usage

sp_raincloud(
  data,
  melted = TRUE,
  xvariable = NULL,
  yvariable = NULL,
  metadata = NULL,
  ID_var = c(),
  coordinate_flip = TRUE,
  position_nudge_flat_violin_x = 0.3,
  position_nudge_flat_violin_y = 0,
  position_nudge_flat_violin_alpha = 0.8,
  palette_color = "Set2",
  palette_fill = "Set2",
  position_nudge_box_x = 0.25,
  box_fill = "white",
  legend.position = NULL,
  extra_ggplot2_cmd = NULL,
  x_label = NULL,
  y_label = NULL,
  title = NULL,
  additional_theme = NULL,
  debug = F,
  ...
)

Arguments

data	Data file (with header line, the first row is the colname, tab seperated. Multiple formats are allowed and described above)
melted	When TRUE, meaning a long format matrix is supplied to data. function will skip preprocess. Default FALSE.
xvariable	The column represents the x-axis values. For unmelted data, the program will use first column as x-variable. If one want to use first row of unmelted data as x-variable, please specify variable here (which is an inner name). Or if one want to use other columns in metadata.
yvariable	The column represents the digital values. For unmelted data, the program will use value as y-variable (which is an inner name). This parameter can only be set when melted is TRUE.
metadata	Giving a metadata file with format specified in example to tell the group information for each sample.
ID_var	Other columns one want to treat as ID variable columns except the one given to xvariable.
coordinate_flip	Rotate the plot from vertical to horizontal. Usefull for plots with many values or very long labels at X-axis
position_nudge_flat_violin_x	The violin moves on the X-axis. Default 0.3.
position_nudge_flat_violin_y	The violin moves on the Y-axis. Default 0.
position_nudge_flat_violin_alpha	The violin transparency.
palette_color	The violin palette.
palette_fill	The point palette.
position_nudge_box_x	The box moves on the X-axis. Default 0.25.
box_fill	Box color.
...	Parametes given to sp_ggplot_layout

Value

A ggplot2 object

Tong-Chen/YSX documentation built on Jan. 25, 2021, 2:49 a.m.