sp_vennDiagram3: Generating venDiagram plot

In Tong-Chen/YSX: For Yishengxin Training

Description

Generating venDiagram plot

Usage

sp_vennDiagram3(
  data,
  header = TRUE,
  item_variable = NULL,
  set_variable = NULL,
  select_set_to_show = NULL,
  doWeights = FALSE,
  type = "ellipses",
  SetLabels = TRUE,
  Faces = TRUE,
  Sets = TRUE,
  FaceText = "weight",
  saveplot = NULL,
  debug = FALSE,
  saveppt = FALSE,
  ...
)

Arguments

data	Data file (the first column is the name of genes or other things one want to compare, the second column is set name of each items, tab separated).
item_variable	Specify the column containing all items (one of column names of data).
set_variable	Specify the column containing set names (one of column names of data).
select_set_to_show	Specific sets to look at.
doWeights	Whether to use weights to represent data sets
type	Represent data sets in different shapes. Do weighted select NO if the results are wrong For 2-set Venn diagrams: circles, squares. For 3-set Venn diagrams: circles, squares, ChowRuskey, triangles, AWFE. For 4-set Venn diagrams: ChowRuskey, AWFE, squares or ellipses. For Venn diagrams on more than four sets: classic(up to 8 sets), battle(up to 9 sets).
SetLabels	Whether to plot the names of the Sets. Default TRUE.
Faces	If Faces = TRUE, the sets will be filled with colors.
Sets	If Sets = TRUE, the boundaries of the Sets are shown.
FaceText	FaceText is a character vector which may contain any of c('weight','signature','sets','elements').
saveplot	Save plot to given file "a.pdf", "b.png".
...	Other parameters given to base_plot_save

Value

A pdf file.

Examples

## Not run:
vennDiagram_data = "vennDiagram.data"
sp_vennDiagram3(data=vennDiagram_data, header = TRUE, item_variable = "Gene",  set_variable = "Sample",
select_set_to_show = c("Set1","Set2","Set3"), doWeights = TRUE, type = "AWFE")
## End(Not run)

Tong-Chen/YSX documentation built on Jan. 25, 2021, 2:49 a.m.