API for TranslationalBioinformaticsLab/INDELfindR
Indel Detection from Human Genomic Sequence Data
| Global functions | |
|---|---|
| calculate_strand_bias_pval_vaf_and_dp_parallel | Man page Source code |
| calculate_strand_bias_pval_vaf_and_dp_parallel_each_indel | Man page Source code |
| convert_cigar_to_verbose_string | Man page Source code |
| filter_and_annotate_calls | Man page Source code |
| getIndelCoverage | Man page Source code |
| getVaf | Man page Source code |
| get_primary_chroms | Man page Source code |
| refine_cigar_string | Man page Source code |
| run_algo_all_reads_each_bam_region_with_simple_indel_padding | Man page Source code |
| run_algo_on_one_read_explicit_args_with_simple_indel_padding | Man page Source code |
| run_indelfindr | Man page Source code |
| seq_with_uneven_last | Man page |
| translate_cigar_index_to_ref_and_query_algo_dev_sliding | Man page Source code |
| translate_cigar_index_to_ref_and_query_v2 | Man page Source code |
| translate_cigar_index_to_ref_and_query_v2_with_simple_indel_padd | Man page Source code |
| translate_cigar_index_to_ref_and_query_whole_read | Man page Source code |
| unexplode_cigar_string | Man page Source code |
| write.vcf | Man page Source code |
