run_algo_on_one_read_explicit_args_with_simple_indel_padding: run_algo_on_one_read_explicit_args_with_simple_indel_padding

In TranslationalBioinformaticsLab/INDELfindR: Indel Detection from Human Genomic Sequence Data

run_algo_on_one_read_explicit_args_with_simple_indel_padding

Description

run_algo_on_one_read_explicit_args_with_simple_indel_padding

Usage

run_algo_on_one_read_explicit_args_with_simple_indel_padding(
  per_bam_region_indel_records,
  refined_cigar_string,
  flanking_region_length,
  query_sequence_string,
  reference_sequence,
  read_pos,
  query_read_length,
  read_strand,
  read_name_record,
  number_leading_softclips,
  number_leading_hardclips,
  each_chromosome,
  min_indel_length
)

Arguments

per_bam_region_indel_records	per_bam_region_indel_records
refined_cigar_string	refined_cigar_string
flanking_region_length	flanking_region_length
query_sequence_string	query_sequence_string
reference_sequence	reference_sequence
read_pos	read_pos
query_read_length	query_read_length
read_strand	read_strand
read_name_record	read_name_record
number_leading_softclips	number_leading_softclips
number_leading_hardclips	number_leading_hardclips
each_chromosome	each_chromosome
min_indel_length	min_indel_length

Value

per_bam_region_indel_records

TranslationalBioinformaticsLab/INDELfindR documentation built on Nov. 11, 2023, 11:35 p.m.