run_algo_all_reads_each_bam_region_with_simple_indel_padding: run_algo_all_reads_each_bam_region_with_simple_indel_padding

In TranslationalBioinformaticsLab/INDELfindR: Indel Detection from Human Genomic Sequence Data

run_algo_all_reads_each_bam_region_with_simple_indel_padding

Description

run_algo_all_reads_each_bam_region_with_simple_indel_padding

Usage

run_algo_all_reads_each_bam_region_with_simple_indel_padding(
  row_num,
  per_bam_region_indel_records,
  mapq_threshold,
  bamPath,
  each_chromosome,
  sliding_windows_per_bam_region,
  verbose_arg,
  hg38_genome_chr_subset,
  flanking_region_length,
  min_indel_length
)

Arguments

row_num	row_num
per_bam_region_indel_records	per_bam_region_indel_records
mapq_threshold	mapq_threshold
bamPath	bamPath
each_chromosome	each_chromosome
sliding_windows_per_bam_region	sliding_windows_per_bam_region
verbose_arg	verbose_arg
hg38_genome_chr_subset	hg38_genome_chr_subset
flanking_region_length	flanking_region_length
min_indel_length	min_indel_length

Value

per_bam_region_indel_records

TranslationalBioinformaticsLab/INDELfindR documentation built on Nov. 11, 2023, 11:35 p.m.