run_indelfindr: run_indelfindr

In TranslationalBioinformaticsLab/INDELfindR: Indel Detection from Human Genomic Sequence Data

run_indelfindr

Description

run_indelfindr

Usage

run_indelfindr(
  bamPath,
  bam_region_bin_size,
  verbose_arg,
  flanking_region_length,
  target_regions,
  number_cores,
  primary_chromosomes,
  min_indel_length,
  mapq_threshold,
  min_supporting_reads,
  min_vaf,
  min_read_depth,
  outname
)

Arguments

bamPath	bamPath
bam_region_bin_size	bam_region_bin_size
verbose_arg	verbose_arg
flanking_region_length	flanking_region_length
target_regions	target_regions
number_cores	number_cores
primary_chromosomes	primary_chromosomes
min_indel_length	min_indel_length
mapq_threshold	mapq_threshold
min_supporting_reads	min_supporting_reads
min_vaf	min_vaf
min_read_depth	min_read_depth
outname	outname

TranslationalBioinformaticsLab/INDELfindR documentation built on Nov. 11, 2023, 11:35 p.m.