Man pages for TranslationalBioinformaticsLab/INDELfindR
Indel Detection from Human Genomic Sequence Data
| calculate_strand_bias_pval_vaf_and_dp_parallel | calculate_strand_bias_pval_vaf_and_dp_parallel |
| calculate_strand_bias_pval_vaf_and_dp_parallel_each_indel | calculate_strand_bias_pval_vaf_and_dp_parallel_each_indel |
| convert_cigar_to_verbose_string | convert_cigar_to_verbose_string |
| filter_and_annotate_calls | filter_and_annotate_calls |
| getIndelCoverage | getIndelCoverage |
| get_primary_chroms | get_primary_chroms |
| getVaf | getVaf |
| refine_cigar_string | refine_cigar_string |
| run_algo_all_reads_each_bam_region_with_simple_indel_padding | run_algo_all_reads_each_bam_region_with_simple_indel_padding |
| run_algo_on_one_read_explicit_args_with_simple_indel_padding | run_algo_on_one_read_explicit_args_with_simple_indel_padding |
| run_indelfindr | run_indelfindr |
| seq_with_uneven_last | Title |
| translate_cigar_index_to_ref_and_query_algo_dev_sliding | translate_cigar_index_to_ref_and_query_algo_dev_sliding |
| translate_cigar_index_to_ref_and_query_v2 | translate_cigar_index_to_ref_and_query_v2 |
| translate_cigar_index_to_ref_and_query_v2_with_simple_indel_padding | translate_cigar_index_to_ref_and_query_v2_with_simple_indel_padding |
| translate_cigar_index_to_ref_and_query_whole_read | translate_cigar_index_to_ref_and_query_whole_read |
| unexplode_cigar_string | unexplode_cigar_string |
| write.vcf | write.vcf |
