| add_button | add_button |
| add_header_button | add_header_button |
| advance | advance |
| combine_populations | combine_populations |
| count_chr_length | count_chr_length |
| create_families | create_families |
| create_genome | create_genome |
| create_haplotypes_from_scheme | create_haplotypes_from_scheme |
| create_marker_set | create_marker_set |
| create_population | create_population |
| create_scheme | create_scheme |
| cross | cross |
| crossword_gui | crossword_gui |
| dh | dh |
| draw_haplotypes | draw_haplotypes |
| draw_PGplots | draw_PGplots |
| draw_population | draw_population |
| filter_parents | filter_parents |
| genomic_prediction | genomic_prediction |
| genotypes_out | genotypes_out |
| get_genotypes | get_genotypes |
| get_haplotype_matrix | get_haplotype_matrix |
| get_level | get_level |
| get_marker_intersection | get_marker_intersection |
| get_parental_genotypes | get_parental_genotypes |
| get_values | get_values |
| get_vr | get_vr |
| haplotypes_in | haplotypes_in |
| haplotypes_out | haplotypes_out |
| mas | mas |
| parental_contribution | parental_contribution |
| phenotype | phenotype |
| phenotype_out | phenotype_out |
| physical2genomic | physical2genomic |
| pick_individual | pick_individual |
| random_qtn_assign | random_qtn_assign |
| run_batch | run_batch |
| run_pipeline | run_pipeline |
| select | select |
| select_haplotype | select_haplotype |
| simulate_fastq | simulate_fastq |
| vcf2hapmap | vcf2hapmap |
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