draw_haplotypes: draw_haplotypes

In USDA-ARS-GBRU/crossword: Breeding program similation sotware

draw_haplotypes

Description

The function creates plots of all individuals in the input haplotype, which show the parental contributions for every chromosome.

Usage

draw_haplotypes(haplotypes,output_folder,parental_genotypes,heterozygous,by_chromosomes,im_type)

Arguments

haplotypes	Required: a haplotype object input.
output_folder	Required: an output folder to be created and store the images.
parental_genotypes	Required: the parental genotyping object
heterozygous	Optional: a logical argument to provide if the crop is heterozygous, default: TRUE
by_chromosomes	Optional: a logical argument to provide if the haplotypes will be sorted in the graphs by chromosomes, default: TRUE
im_type	Optional: the type of images

Examples

founders = read.table("parents.txt")[,1]
draw_haplotypes(haplotypes,'output_haplo',parental_genotypes)

USDA-ARS-GBRU/crossword documentation built on Oct. 11, 2024, 12:51 a.m.