filter_parents: filter_parents

In USDA-ARS-GBRU/crossword: Breeding program similation sotware

filter_parents

Description

The function filters vcf or hapmap files for certain parents supplied by user in a text file, and produces a sub-genotype file containing only the supplied parents

Usage

filter_parents(input,output,selected_parents_file)

Arguments

input	Required: an input vcf of hapmap files
output	Required: output file path/name
selected_parents_file	Required: an input file of a list of parents

Examples

filter_parents("parental_genotypes.hapmap","filtered_parental_genotypes.hapmap","selected_parents_file")

USDA-ARS-GBRU/crossword documentation built on April 5, 2023, 7:29 p.m.