genotypes_out: genotypes_out

In USDA-ARS-GBRU/crossword: Breeding program similation sotware

genotypes_out

Description

The function exports genotypes into hapmap format and SNP genomic locations in a three column format (chr, pos, and loci).

Usage

genotypes_out(haplo_genotypes,output,pop,parental_genotypes,A_parent, B_parent)

Arguments

haplo_genotypes	Required: an input genotypes object, the output of "get_genotypes" function
output	Required: a prefix of the output files
level	Optional: the level of outputs
pop	Optional: the input population, required if level is assigned
parental_genotypes	Optional: the parental genotype object, is required if the user needs output in map format of biparental
A_parent	Optional: the parent A in mapping of bipaerntal
B_parent	Optional: the parent B in mapping of bipaerntal

Examples

genotypes_out(haplo_genotypes,"haplo_genotypes.csv")

USDA-ARS-GBRU/crossword documentation built on April 5, 2023, 7:29 p.m.