create_genome: create_genome

In USDA-ARS-GBRU/crossword: Breeding program similation sotware

create_genome

Description

create_genome creates two sets of genomes for every individual
It takes a fasta genome file and genotype object as hapmap file.
For every individual in the genotype file, two genome fasta files will be produced for the two possible alleles in for every loci.

Usage

create_genome(fa,genotype,output,haploid_only,max_total_size_in_gb)

Arguments

fa	Required: the genome fasta file
genotype	Required: a hapmap file
output	Required: a prefix of output files
haploid_only	Optional: if haploid or diploid genome will be produced, default is TRUE
max_total_size_in_gb	Optional: size quota which should not be exceeded, default is 10 gb

Value

the genomic location.

Examples

fa = "Gmax_275_v2.0.fa"
genotype = "pop8_marker_set.hapmap.hapmap"
output="genome"
create_genome(fa,genotype,output)

USDA-ARS-GBRU/crossword documentation built on May 23, 2024, 11:45 p.m.