create_marker_set: create_marker_set

In USDA-ARS-GBRU/crossword: Breeding program similation sotware

create_marker_set

Description

The function creates marker sub sets from genotype object of N number of random marker with a certain allele frequency cutoff.

Usage

create_marker_set(genotypes,N,MAF,input_geno_file,pheno,geno,biased_selection,gen2phy,parental_genotypes)

Arguments

genotypes	Required: input genotype object
N	Optional: number of markers to be selected randomly
MAF	Optional: minor allels frequency cutoff
no_qtn	Optional: a list of qtn to be excluded from the selected markers
biased_selection	optional: if TRUE, the randomly selected QTNs are biased to gene denesity regions
gen2phy	optinal: gen2phy object to calculate biased_selection
parental_genotypes	Required: parental_genotypes object

Value

a genotype object of two datasets; genotypes and gen2phy

Examples

ms1 = create_marker_set(genotypes=genotypes,N=6,MAF=0.2)

USDA-ARS-GBRU/crossword documentation built on April 5, 2023, 7:29 p.m.