generate_best_reciprocal_hits_matrix: generate_best_reciprocal_hits_matrix

In VCCRI/XGSA: XGSA: A statistical method for cross-species gene set analysis

Description

This function generates a homology matrix based on the best reciprocal hits method. Note: this can still give not perfect 1-1 mapping if homologs have identical sequence conservation in each direction

Usage

generate_best_reciprocal_hits_matrix(hms1, hms2, homology_table)

Arguments

hms1	Homology matrix with homology scores with species 1 as rows
hms2	Homology matrix with homology scores with species 2 as rows
homology_table	Table of homology mapping between two species (species 1 in column 1 and species 2 in column 2)

Details

This function generates a homology matrix based on the best reciprocal hits method. Note: this can still give not perfect 1-1 mapping if homologs have identical sequence conservation in each direction

Value

This function returns a sparse matrix

Examples

Not used trivially

VCCRI/XGSA documentation built on March 5, 2021, 10:22 p.m.