Description Usage Arguments Details Value Examples
This function retrieves GO mappings with only the supplied evidence codes and from only the supplied ontologies and converts the result into a list. It retrieves the full and redundant GO mappings.
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species |
Species name in the form 'hsapiens' |
evidence.codes |
A character vector of evidence codes, defaults to 'direct' evidence = c("EXP","IDA","IPI","IMP","IGI","IEP", "TAS", "IC"). A description of GO evidence codes can be found here: http://geneontology.org/page/guide-go-evidence-codes |
ontologies |
A character vector of the desired ontologies to query, defaults to all three of them - i.e. c("biological_process", "molecular_function", "cellular_component") |
This function retrieves GO mappings with only the supplied evidence codes and from only the supplied ontologies and converts the result into a list. It retrieves the full and redundant GO mappings.
This function returns a named list of GO terms with annotated Ensembl gene IDs within each element.
1 | Human_full_GO <- get_GO('hsapiens')
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