get_overlap_genes: get_overlap_genes

In VCCRI/XGSA: XGSA: A statistical method for cross-species gene set analysis

Description

This function returns the genes that overlap between the two sets.

Usage

get_overlap_genes(row_genes, col_genes, homology_matrix, min = 5, max = 500)

Arguments

row_genes	Ensembl gene IDs from species A
col_genes	Ensembl gene IDs from species B
homology_matrix	The homology matrix for species A and B
min	Minimum gene set sizes to be considered, default is 5
max	Maximum gene set sizes to be considered, default is 500

Details

This function returns the genes that overlap between the two sets.

Value

This function returns a list with two vectors of gene IDs, matching the row and column species of the homology table.

Examples

Used within XGSA framework

VCCRI/XGSA documentation built on March 5, 2021, 10:22 p.m.