paired_fishers_exact_tests: paired_fishers_exact_tests

In VCCRI/XGSA: XGSA: A statistical method for cross-species gene set analysis

Description

This function executes the paired Fisher's exact tests which form the basis of XGSA.

Usage

paired_fishers_exact_tests(row_genes, col_genes, homology_matrix, min = 5,
  max = 500, rowuniverse, coluniverse)

Arguments

row_genes	Ensembl gene IDs from species A
col_genes	Ensembl gene IDs from species B
homology_matrix	The homology matrix for species A and B
min	Minimum gene set sizes to be considered, default is 5
max	Maximum gene set sizes to be considered, default is 500
rowuniverse	Gene universe in species A
coluniverse	Gene universe in species B

Details

This function executes the paired Fisher's exact tests which form the basis of XGSA.

Value

This function returns a single numeric p-value

Examples

Used within XGSA framework

VCCRI/XGSA documentation built on March 5, 2021, 10:22 p.m.