get_ENSEMBL_trasncript_table: get_ENSEMBL_trasncript_table
In VCCRI/XGSA: XGSA: A statistical method for cross-species gene set analysis
Description
Usage
Arguments
Details
Value
Examples
Description
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Usage
1
get_ENSEMBL_trasncript_table(species)
Arguments
species
Species name in the form 'hsapiens'
Details
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Value
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Examples
1
2
transcript_table <- get_ENSEMBL_trasncript_table('hsapiens')
head(transcript_table)
VCCRI/XGSA documentation built on March 5, 2021, 10:22 p.m.
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Description Usage Arguments Details Value Examples
Description
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Usage
1 | get_ENSEMBL_trasncript_table(species)
|
Arguments
species |
Species name in the form 'hsapiens' |
Details
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Value
This helper function returns a data frame with Ensembl gene IDs in the first column and Ensembl transcript IDs in the second column. This can be useful when gene expression data has been mapped to transcripts for example.
Examples
1 2 | transcript_table <- get_ENSEMBL_trasncript_table('hsapiens')
head(transcript_table)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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