Description Usage Arguments Details Value Examples
This function uses information from Ensembl to generate a homology table between two species.
1 | get_homology_table(species1, species2, sequence_identity_reference = 0)
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species1 |
Species 1 name, in the form 'hsapiens' |
species2 |
Species 2 name, in the form 'hsapiens' |
sequence_identity_reference |
Flag of which sequence identity value to retrieve. 0 (default) returns no value); 1 returns the sequence of identity of genes in species 2 compared to species 1; 2 returns the sequence of identity of genes in species 1 compared to species 2. |
This function uses information from Ensembl to generate a homology table between two species.
This function return a data frame with 2 or 3 columns, representing the Ensembl gene IDs in species 1 and 2, and the sequence identity score if requested.
1 2 | human_zebrafish_homology_table <- get_homology_table('hsapiens', 'drerio')
head(human_zebrafish_homology_table)
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