Man pages for VCCRI/scTalk
Single-cell talk - an R package for analysis of cell-cell communication networks from single-cell data.
| calculate_cluster_specific_expression | Calculate expression metrics across clusters for a set of... |
| CellCirclePlot | Generate a circle plot of significant cell-cell connections |
| EvaluateConnections | Perform permutation testing on network edges |
| GenerateEdgeWeights | Generates files of cluster:ligand:receptor:cluster edge... |
| GenerateNetworkPaths | Generates files of weighted source:ligand:receptor:target... |
| get_gene_pair_expression_values | Identify expression of ligands/receptors among clusters |
| get_weighted_paths | Determine weights paths between query source and target... |
| InboundOutboundPlot | Plot inbound vs outbound weights |
| make_STRING_table | Ligand:receptor association scores |
| NetworkTreePlot | Generate a network plot linking... |
| PlotTopLigands | Plot a bar graph of the top ligands |
| randomise_FC_weights | Randomise source:ligand and receptor:target weights |
| rescale_node_coordinates | Rescale nodes in a ggraph tree for even distribution |
