EvaluateConnections: Perform permutation testing on network edges

In VCCRI/scTalk: Single-cell talk - an R package for analysis of cell-cell communication networks from single-cell data.

Description

Uses permutation testing to identify cell-cell connections that have path weights greater than would be expected by change.

Usage

EvaluateConnections(
  file.label,
  populations.test = NULL,
  min.weight = 1.5,
  num.permutations = 1e+05,
  return.results = FALSE,
  ncores = 1
)

Arguments

file.label	label for input and output files
populations.test	set of cell populations to test for (default: all in file)
num.permutations	number of permutations to perform
return.results	whether to return the results table (default: FALSE)
ncores	number of cores to use in parallelisation

Value

NULL - results written to file

VCCRI/scTalk documentation built on June 5, 2021, 6:35 a.m.