InboundOutboundPlot: Plot inbound vs outbound weights

In VCCRI/scTalk: Single-cell talk - an R package for analysis of cell-cell communication networks from single-cell data.

Description

Generates a dot plot showing inbound vs outbound weights for all populations.

Usage

InboundOutboundPlot(
  input.file,
  col.set = NULL,
  p.labels = NULL,
  p.adj.thresh = 0.05,
  lab.weight.thresh = 1000,
  return.plot = TRUE
)

Arguments

input.file	a table of source:ligand:receptor:target paths.
col.set	optional paramater to set colours of the populations.
p.labels	cell-type labels (defaults to labels in input.file)
p.adj.thresh	minimum adjusted P-value for including a cell-cell connection
lab.weight.thresh	minimum weight for labelling populations in the plot.
return.plot	whether to return the ggplot2 object (default: TRUE)

Value

a ggplot2 object.

Examples

## Not run: 
InboundOutboundPlot(path.table = example.table)

## End(Not run)

VCCRI/scTalk documentation built on June 5, 2021, 6:35 a.m.