get_gene_pair_expression_values: Identify expression of ligands/receptors among clusters
In VCCRI/scTalk: Single-cell talk - an R package for analysis of cell-cell communication networks from single-cell data.
Description
Usage
Arguments
Value
View source: R/graph_internal.R
Description
For a set of ligand-receptor pairs, evaluates whether one of the gene pairs is expressed
for each of the clusters and builds a table mapping each ligand-expressing cluster to
each corresponding receptor-expressing cluster.
Usage
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get_gene_pair_expression_values(
ligand.receptor.pairs,
mapping.table,
cluster.names,
gene.de.results
)
Arguments
ligand.receptor.pairs
table of ligand-receptor pairs
mapping.table
human:mouse gene ID mappings
cluster.names
set of cluster IDs to use
gene.de.results
table of expression values produced by calculate_cluster_specific_expression
Value
a data-frame of results
VCCRI/scTalk documentation built on June 5, 2021, 6:35 a.m.
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Description Usage Arguments Value
View source: R/graph_internal.R
Description
For a set of ligand-receptor pairs, evaluates whether one of the gene pairs is expressed for each of the clusters and builds a table mapping each ligand-expressing cluster to each corresponding receptor-expressing cluster.
Usage
1 2 3 4 5 6 | get_gene_pair_expression_values(
ligand.receptor.pairs,
mapping.table,
cluster.names,
gene.de.results
)
|
Arguments
ligand.receptor.pairs |
table of ligand-receptor pairs |
mapping.table |
human:mouse gene ID mappings |
cluster.names |
set of cluster IDs to use |
gene.de.results |
table of expression values produced by calculate_cluster_specific_expression |
Value
a data-frame of results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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