PlotTopLigands: Plot a bar graph of the top ligands

In VCCRI/scTalk: Single-cell talk - an R package for analysis of cell-cell communication networks from single-cell data.

Description

Plot a bar graph of the top ligands

Usage

PlotTopLigands(
  input.file,
  cell.identity,
  col.use = "#757575",
  min.weight = 2,
  max.plot.num = 15,
  title.use = NULL
)

Arguments

input.file	a table of source:ligand:receptor:target paths.
cell.identity	the name of a cell population/cluster to use
col.use	optional paramater to set colour of the bar graph.
min.weight	minimum weight for including paths in the top ligand calculations.
max.plot.num	the maximum number of ligands to plot

Value

a ggplot2 object.

Examples

## Not run: 
PlotTopLigands(path.table = example.table, cell.identity = '1')

## End(Not run)

VCCRI/scTalk documentation built on June 5, 2021, 6:35 a.m.