Files in VEuPathDB/veupathUtils

General Helper Functions for VEuPathDB Projects

.dev/megastudy-helpers.R LICENSE.md R/class-Bin.R R/class-CollectionWithMetadata.R R/class-Collections.R R/class-Comparator.R R/class-ComputeResult.R R/class-CorrelationResult.R R/class-CountDataCollection.R R/class-Megastudy.R R/class-Range.R R/class-SampleMetadata.R R/class-Statistic.R R/class-VariableMetadata.R R/data.R R/internal-utils.R R/method-correlation.R R/method-differentialExpression.R R/method-pca.R R/methods-Bin.R R/methods-CollectionWithMetadata.R R/methods-Collections.R R/methods-Comparator.R R/methods-ComputeResult.R R/methods-Megastudy.R R/methods-SampleMetadata.R R/methods-Statistic.R R/methods-VariableMetadata.R R/utils-classes.R R/utils-cut.R R/utils-numeric.R R/utils-string.R R/utils.R R/veupathUtils-package.R README.md man/Bin-class.Rd man/Collection-class.Rd man/Collection-methods.Rd man/CollectionWithMetadata-class.Rd man/Collections-class.Rd man/Collections-methods.Rd man/Comparator-class.Rd man/ComputeResult-class.Rd man/CorrelationResult-class.Rd man/CountDataCollection-class.Rd man/Megastudy-class.Rd man/Range-class.Rd man/SampleMetadata-class.Rd man/Statistic-class.Rd man/StudySpecificVocabulariesByVariable-class.Rd man/VariableSpec-class.Rd man/as.numeric-Bin-method.Rd man/as.numeric-BinList-method.Rd man/correlation.Rd man/cut_interval.Rd man/cut_number.Rd man/cut_width.Rd man/data_frame.Rd man/differentialExpression.Rd man/findAllColNames.Rd man/findColNamesByPredicate.Rd man/findColNamesFromPlotRef.Rd man/findCollectionVariableMetadata.Rd man/findDataShapesFromPlotRef.Rd man/findDataTypesFromPlotRef.Rd man/findIndexFromPlotRef.Rd man/findNumericCols.Rd man/findStudyDependentVocabularyVariableMetadata.Rd man/findVariableMetadataFromPlotRef.Rd man/findVariableSpecFromPlotRef.Rd man/findVariablesNeedingWeightingVariableMetadata.Rd man/findWeightingVariablesMetadata.Rd man/getAggStr.Rd man/getColName.Rd man/getCollectionData.Rd man/getCollectionNames.Rd man/getCollectionVariableNames.Rd man/getDTWithImputedZeroes.Rd man/getDataTable.Rd man/getDiscretizedBins.Rd man/getGroupLabels.Rd man/getIdColumns.Rd man/getMetadataVariableNames.Rd man/getMetadataVariableSummary.Rd man/getSampleMetadata.Rd man/getSampleMetadataIdColumns.Rd man/getStudyIdColumnName.Rd man/getVariableSpec.Rd man/getVariableSpecColumnName.Rd man/is.POSIXct.Rd man/is.error.Rd man/isOneToManyWithAncestor.Rd man/logWithTime.Rd man/matchArg.Rd man/megastudyDataReal.Rd man/merge.Rd man/naToZero.Rd man/name.Rd man/nonZeroRound.Rd man/pca.Rd man/predicateFactory-character-numeric-method.Rd man/predicateFactory.Rd man/pruneFeatures.Rd man/removeIncompleteRecords.Rd man/selfCorrelation.Rd man/setAttrFromList.Rd man/setNaToZero.Rd man/setroworder.Rd man/shiftToNonNeg.Rd man/strSplit.Rd man/stripEntityIdFromColumnHeader.Rd man/toJSON.Rd man/toStringOrNull.Rd man/trim.Rd man/validateNumericCols.Rd man/veupathUtils-package.Rd man/whichValuesInBin.Rd man/whichValuesInBinList.Rd man/writeData.Rd man/writeMeta.Rd man/writeStatistics.Rd tests/testthat.R tests/testthat/test-ComputeResult.R tests/testthat/test-class-Bin.R tests/testthat/test-class-CollectionWithMetadata.R tests/testthat/test-class-Collections.R tests/testthat/test-class-CountDataCollection.R tests/testthat/test-class-Megastudy.R tests/testthat/test-class-Statistic.R tests/testthat/test-class-VariableMetadata.R tests/testthat/test-correlation.R tests/testthat/test-method-differentialExpression.R tests/testthat/test-method-pca.R tests/testthat/test-methods-Bin.R tests/testthat/test-methods-VariableMetadata.R tests/testthat/test-utils-classes.R tests/testthat/test-utils-cut.R tests/testthat/test-utils-numeric.R tests/testthat/test-utils-string.R tests/testthat/test-utils.R