Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications

MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Supports DDA, DIA, SRM, and tandem mass tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.

Getting started

Package details

Bioconductor views DifferentialExpression ImmunoOncology MassSpectrometry Normalization OneChannel Proteomics QualityControl Software TwoChannel
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Vitek-Lab/MSstatsPTM documentation built on Nov. 7, 2023, 2:57 a.m.