README.md
In Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications
MSstatsPTM
MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Supports DDA, DIA, and tandem mass tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.
Installation
The most recent version of the package is available on Bioconductor:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsPTM")
Optionally, the package can be installed directly from Github:
devtools::install_github("Vitek-Lab/MSstatsPTM", build_vignettes = TRUE)
Contributing
We welcome contributions from the community. For details on how to contribute to the
development of MSstatsPTM, please refer to the CONTRIBUTING file.
License
Vitek-Lab/MSstatsPTM documentation built on May 1, 2024, 8:25 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
MSstatsPTM
MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Supports DDA, DIA, and tandem mass tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.
Installation
The most recent version of the package is available on Bioconductor:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsPTM")
Optionally, the package can be installed directly from Github:
devtools::install_github("Vitek-Lab/MSstatsPTM", build_vignettes = TRUE)
Contributing
We welcome contributions from the community. For details on how to contribute to the development of MSstatsPTM, please refer to the CONTRIBUTING file.
License
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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