maxq_tmt_evidence: Example MaxQuant evidence file from the output of a TMT...
In Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications
maxq_tmt_evidence R Documentation
Example MaxQuant evidence file from the output of a TMT experiment
Description
Experiment was performed by the Olsen lab and published on Nat. Commun.
(citation below).
Usage
maxq_tmt_evidence
Format
a data.table with 96 columns and 199 rows, the output of MaxQuant
Details
Hogrebe, A., von Stechow, L., Bekker-Jensen, D.B. et al. Benchmarking common
quantification strategies for large-scale phosphoproteomics. Nat Commun 9,
1045 (2018). https://doi.org/10.1038/s41467-018-03309-6
The experiment was processed using MaxQuant by the computational proteomics
team at Pfizer (Liang Xue and Pierre Jean).
The experiment did not contain a global profiling run, but we show an example
of extracting the unmodified peptides and using them in place of the
profiling run.
Examples
head(maxq_tmt_evidence)
Vitek-Lab/MSstatsPTM documentation built on April 21, 2024, 6:45 a.m.
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| maxq_tmt_evidence | R Documentation |
Example MaxQuant evidence file from the output of a TMT experiment
Description
Experiment was performed by the Olsen lab and published on Nat. Commun. (citation below).
Usage
maxq_tmt_evidence
Format
a data.table with 96 columns and 199 rows, the output of MaxQuant
Details
Hogrebe, A., von Stechow, L., Bekker-Jensen, D.B. et al. Benchmarking common quantification strategies for large-scale phosphoproteomics. Nat Commun 9, 1045 (2018). https://doi.org/10.1038/s41467-018-03309-6
The experiment was processed using MaxQuant by the computational proteomics team at Pfizer (Liang Xue and Pierre Jean).
The experiment did not contain a global profiling run, but we show an example of extracting the unmodified peptides and using them in place of the profiling run.
Examples
head(maxq_tmt_evidence)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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