spectronaut_annotation: Example annotation file for a label-free Spectronaut...
In Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications
spectronaut_annotation R Documentation
Example annotation file for a label-free Spectronaut experiment.
Description
Must be manually created by the user and input into the
SpectronauttoMSstatsPTMFormat converter. Requires the correct columns and
maps the experimental desing into the MSstats format. Specify unique
bioreplicates for group comparison designs, and the same bioreplicate for
repeated measure designs. The columns and descriptions are below.
Usage
spectronaut_annotation
Format
A data.table with 5 columns.
Details
Run : Run name that matches exactly with Spectronaut run. Used to join
evidence and metadata in annotation file.
Condition : Name of condition that was used for each run.
BioReplicate : Name of biological replicate. Repeating the same name
here will tell MSstatsPTM that the experiment is a repeated measure design.
Raw.file : Run name that matches exactly with Spectronaut run. Used to join
evidence and metadata in annotation file.
Examples
head(spectronaut_annotation)
Vitek-Lab/MSstatsPTM documentation built on Sept. 26, 2024, 9:28 p.m.
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| spectronaut_annotation | R Documentation |
Example annotation file for a label-free Spectronaut experiment.
Description
Must be manually created by the user and input into the SpectronauttoMSstatsPTMFormat converter. Requires the correct columns and maps the experimental desing into the MSstats format. Specify unique bioreplicates for group comparison designs, and the same bioreplicate for repeated measure designs. The columns and descriptions are below.
Usage
spectronaut_annotation
Format
A data.table with 5 columns.
Details
Run : Run name that matches exactly with Spectronaut run. Used to join evidence and metadata in annotation file.
Condition : Name of condition that was used for each run.
BioReplicate : Name of biological replicate. Repeating the same name here will tell MSstatsPTM that the experiment is a repeated measure design.
Raw.file : Run name that matches exactly with Spectronaut run. Used to join evidence and metadata in annotation file.
Examples
head(spectronaut_annotation)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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