raw.input: Example of input PTM dataset for LabelFree/DDA/DIA...
In Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications
raw.input R Documentation
Example of input PTM dataset for LabelFree/DDA/DIA experiments.
Description
It can be the output of MSstatsPTM converter ProgenesistoMSstatsPTMFormat or
other MSstats converter functions (Please see MSstatsPTM_LabelFree_Workflow
vignette). The dataset is formatted as a list with two data.tables named PTM
and PROTEIN. In each data.table the variables are as follows:
Usage
raw.input
Format
A list of two data.tables named PTM and PROTEIN with 1745 and 478
rows respectively.
Details
#'
ProteinName : Name of protein with modification site mapped in with
an underscore. ie "Protein_4_Y474"
PeptideSequence
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
Run : MS run ID.
Intensity
PrecursorCharge
FragmentIon
ProductCharge
IsotopeLabelType
Examples
head(raw.input$PTM)
head(raw.input$PROTEIN)
Vitek-Lab/MSstatsPTM documentation built on Sept. 26, 2024, 9:28 p.m.
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| raw.input | R Documentation |
Example of input PTM dataset for LabelFree/DDA/DIA experiments.
Description
It can be the output of MSstatsPTM converter ProgenesistoMSstatsPTMFormat or other MSstats converter functions (Please see MSstatsPTM_LabelFree_Workflow vignette). The dataset is formatted as a list with two data.tables named PTM and PROTEIN. In each data.table the variables are as follows:
Usage
raw.input
Format
A list of two data.tables named PTM and PROTEIN with 1745 and 478 rows respectively.
Details
#'
ProteinName : Name of protein with modification site mapped in with an underscore. ie "Protein_4_Y474"
PeptideSequence
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
Run : MS run ID.
Intensity
PrecursorCharge
FragmentIon
ProductCharge
IsotopeLabelType
Examples
head(raw.input$PTM)
head(raw.input$PROTEIN)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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